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Selected publications

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2016 (out of 76)

  1. Krais, AM.; Speksnijder, EN.; Melis, JPM.; Indra, R.; Moserová, M.; Godschalk, RW.; van Schooten, F.; Seidel, A.; Kopka, K.; Schmeiser, HH.; Stiborová, M.; Phillips, DH.; Luijten, M.; Arlt, VM.; The impact of p53 on DNA damage and metabolic activation of the environmental carcinogen benzo[a]pyrene: effects in Trp53(+/+), Trp53(+/-) and Trp53(-/-) mice. Archives of Toxicology, 2016, Roč. 90, č. 4, s.839-851. IF 5.98 DOI: 10.1007/s00204-015-1531-8
  2. Jeřábek, P.; Florián, J.; Martínek, V.; Lipid molecules can induce an opening of membrane-facing tunnels in cytochrome P450 1A2. Physical Chemistry Chemical Physics, 2016, Roč. 18, č. 44, s.30344-30356. IF 4.44 DOI: 10.1039/c6cp03692a
  3. Vašková, L.; Nosková, L.; Bláhová, B.; Wimmerová, M.; Dřevínek, P.; Kubíčková, B.; Stiborová, M.; Hodek, P.; Evaluation of anti-PAIIL lectin hen yolk antibody as an agent inhibiting Pseudomonas aeruginosa adherence to epithelial cells. Monatshefte für Chemie, 2016, Roč. 147, č. 5, s.889-896. IF 1.22 DOI: 10.1007/s00706-016-1687-9
  4. Šulc, M.; Indra, R.; Moserová, M.; Schmeiser, H.; Frei, E.; Arlt, V.; Stiborová, M.; The impact of individual cytochrome P450 enzymes on oxidative metabolism of benzo[a]pyrene in human livers. Environmental and Molecular Mutagenesis, 2016, Roč. 57, č. 3, s.229-235. IF 2.63 DOI: 10.1002/em.22001
  5. Jeřábek, P.; Florián, J.; Martínek, V.; Membrane-Anchored Cytochrome P450 1A2-Cytochrome b5 Complex Features an X-Shaped Contact between Antiparallel Transmembrane Helices. Chemical Research in Toxicology, 2016, Roč. 29, č. 4, s.626-636. IF 3.53 DOI: 10.1021/acs.chemrestox.5b00349
  6. Dračínská, H.; Bárta, F.; Levová, K.; Hudecová, A.; Moserová, M.; Schmeiser, H.; Kopka, K.; Frei, E.; Arlt, V.; Stiborová, M.; Induction of cytochromes P450 1A1 and 1A2 suppresses formation of DNA adducts by carcinogenic aristolochic acid I in rats in vivo. Toxicology, 2016, Roč. 344, č. FEB 2016, s.7-18. IF 3.62 DOI: 10.1016/j.tox.2016.01.011
  7. Lambry, J.; Stráňava, M.; Lobato, L.; Martínková, M.; Shimizu, T.; Liebl, U.; Vos, M.; Ultrafast Spectroscopy Evidence for Picosecond Ligand Exchange at the Binding Site of a Herne Protein: Heme-Based Sensor YddV. Journal of Physical Chemistry Letters, 2016, Roč. 7, č. 1, s.69-74. IF 7.45 DOI: 10.1021/acs.jpclett.5b02517
  8. Heřmanová, I.; Arruabarrena-Aristorena, A.; Vališ, K.; Nuskova, H.; Alberich-Jorda, M.; Fišer, K.; Fernandez-Ruiz, S.; Kavan, D.; Pecinova, A.; Niso-Santano, M.; Žaliová, M.; Novák, P.; Houstek, J.; Mracek, T.; Kroemer, G.; Carracedo, A.; Trka, J.; Starková, J.; Pharmacological inhibition of fatty-acid oxidation synergistically enhances the effect of L-asparaginase in childhood ALL cells. Leukemia, 2016, Roč. 30, č. 1, s.209-218. IF 12.1 DOI: 10.1038/leu.2015.213
  9. Machara, A.; Lux, V.; Kožíšek, M.; Grantz Šašková, K.; Štěpánek, O.; Kotora, M.; Parkan, K.; Pávová, M.; Glass, B.; Sehr, P.; Lewis, J.; Müller, B.; Kräusslich, H.; Konvalinka, J.; Specific Inhibitors of HIV Capsid Assembly Binding to the C-Terminal Domain of the Capsid Protein: Evaluation of 2-Arylquinazolines as Potential Antiviral Compounds. Journal of Medicinal Chemistry, 2016, Roč. 59, č. 2, s.545-558. IF 5.58 DOI: 10.1021/acs.jmedchem.5b01089
  10. Stráňava, M.; Martínek, V.; Man, P.; Fojtíková, V.; Kavan, D.; Vaněk, O.; Shimizu, T.; Martínková, M.; Structural Characterization of the Heme-based Oxygen Sensor, AfGcHK, its Interactions with the Cognate Response Regulator, and their Combined Mechanism of Action in a Bacterial Two-component Signaling System. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, Roč. 84, č. 10, s.1375-1389. IF 2.49 DOI: 10.1002/prot.25083
  11. Šácha, P.; Knedlík, T.; Schimer, J.; Tykvart, J.; Parolek, J.; Navrátil, V.; Dvořáková, P.; Sedlák, F.; Ulbrich, K.; Strohalm, J.; Majer, P.; Šubr, V.; Konvalinka, J.; iBodies: Modular Synthetic Antibody Mimetics Based on Hydrophilic Polymers Decorated with Functional Moieties. Angewandte Chemie - International Edition, 2016, Roč. 55, č. 7, s.2356-2360. IF 11.7 DOI: 10.1002/anie.201508642
  12. Navrátil, M.; Tykvart, J.; Schimer, J.; Pachl, P.; Navrátil, V.; Rokob, TA.; Hlouchová, K.; Rulíšek, L.; Konvalinka, J.; Comparison of human glutamate carboxypeptidases II and III reveals their divergent substrate specificities. FEBS Journal, 2016, Roč. 283, č. 13, s.2528-2545. IF 4.23 DOI: 10.1111/febs.13761

  13. Pompach, P.; Benada, O.; Rosůlek, M.; Darebná, P.; Hausner, J.; Růžička, V.; Volný, Novák, P.; Protein Chips Compatible with MALDI Mass Spectrometry Prepared by Ambient Ion Landing. Analytical Chemistry, 2016, Roč. 88, č. 17, s.8526-8534. IF 5.58 DOI: 10.1021/acs.analchem.6b01366

  14. Stiborová, M.; Indra, R.; Moserová, M.; Frei, E.; Schmeiser, H.; Kopka, K.; Philips, D.; Arlt, V.; NADH:Cytochrome b(5) Reductase and Cytochrome b(5) Can Act as Sole Electron Donors to Human Cytochrome P450 1A1-Mediated Oxidation and DNA Adduct Formation by Benzo[a]pyrene. Chemical Research in Toxicology, 2016, Roč. 29, č. 8, s.1325-1334. IF 3.53 DOI: 10.1021/acs.chemrestox.6b00143

  15. Arlt, VM.; Meinl, W.; Florian, S.; Nagy, E.; Bárta, F.; Thomann, M.; Mrízová, I.; Krais, AM.; Liu, M.; Richards, M.; Mirza, A.; Kopka, K.; Phillips, DH.; Glatt, H.; Stiborová, M.; Schmeiser, HH.; Impact of genetic modulation of SULT1A enzymes on DNA adduct formation by aristolochic acids and 3-nitrobenzanthrone. Archives of Toxicology, 2017, Roč. 91, č. 4, s.1957-1975. IF 6.63 DOI: 10.1007/s00204-016-1808-6

  16. Synková, H.; Hýsková, V.; Garčeková, K.; Křížová, S.; Ryšlavá, H.; Protein as a sole source of nitrogen for in vitro grown tobacco plantlets. Biologia Plantarum, 2016, Roč. 60, č. 4, s.635-644. IF 1.66 DOI: 10.1007/s10535-016-0639-x

2015 (out of 71)

 

  1. Kukačka, Z.; Rosůlek, M.; Strohalm, M.; Kavan, D.; Novák, P.; Mapping protein structural changes by quantitative cross-linking. Methods, 2015, Roč. 89, č. 1 November 2015, s.112-120. IF 3.503 DOI: 10.1016/j.ymeth.2015.05.027

  2. Pavlou, A.; Martínková, M.; Shimizu, T.; Kitanishi, K.; Stráňava, M.; Loullis, A.; Pinakoulaki, E.; Probing the ligand recognition and discrimination environment of the globin-coupled oxygen sensor protein YddV by FTIR and time-resolved step-scan FTIR spectroscopy. Physical Chemistry Chemical Physics, 2015, Roč. 17, č. 26, s.17007-17015. IF 4.449 DOI: 10.1039/c5cp01708d

  3. Beyerle, J.; Frei, E.; Stiborová, M.; Habermann, N.; Ulrich, CM.; Biotransformation of xenobiotics in the human colon and rectum and its association with colorectal cancer. Drug Metabolism Reviews, 2015, Roč. 47, č. 2, s.199-221. IF 4.526 DOI: 10.3109/03602532.2014.996649

  4. Hraběta, J.; Groh, T.; Abdel Rahman, MAK.; Poljaková, J.; Adam, V.; Kizek, R.; Uhlík, J.; Doktorová, H.; Černá, T.; Frei, E.; Stiborová, M.; Eckschlager, T.; Vacuolar-ATPase-mediated intracellular sequestration of ellipticine contributes to drug resistance in neuroblastoma cells. International Journal of Oncology, 2015, Roč. 47, č. 3, s.971-980. IF 3.018 DOI: 10.3892/ijo.2015.3066

  5. Ječmen, T.; Ptáčková, R.; Černá, V.; Dračínská, H.; Hodek, P.; Stiborová, M.; Hudeček, J.; Šulc, M.; Photo-initiated crosslinking extends mapping of the protein-protein interface to membrane-embedded portions of cytochromes P450 2B4 and b5. Methods, 2015, Roč. 89, č. November 2015, s.128-137. IF 3.503 DOI: 10.1016/j.ymeth.2015.07.015

  6. Stiborová, M.; Bárta, F.; Levová, K.; Hodek, P.; Schmeiser, HH.; Arlt, VM.; Martínek, V.; A Mechanism of O-Demethylation of Aristolochic Acid I by Cytochromes P450 and Their Contributions to This Reaction in Human and Rat Livers: Experimental and Theoretical Approaches. International Journal of Molecular Sciences, 2015, Roč. 16, č. 11, s.27561-27575. IF 3.257 DOI: 10.3390/ijms161126047

  7. Stiborová, M.; Bárta, F.; Levová, K.; Hodek, P.; Frei, E.; Arlt, VM.; Schmeiser, HH.; The influence of ochratoxin A on DNA adduct formation by the carcinogen aristolochic acid in rats. Archives of Toxicology, 2015, Roč. 89, č. 11, s.2141-2158. IF 6.637 DOI: 10.1007/s00204-014-1360-1

  8. Ryšlavá, H.; Pomeislová, A.; Pšondrová, Š.; Hýsková, V.; Smrček, S.; Phytoremediation of carbamazepine and its metabolite 10,11-epoxycarbamazepine by C3 and C4 plants. Environmental Science and Pollution Research, 2015, Roč. 22, č. 24, s.20271-20282. IF 2.760 DOI: 10.1007/s11356-015-5190-3

  9. Ingr, M.; Lange, R.; Halabalová, V.; Yehya, A.; Hrnčiřík, J.; Chevalier-Lucia, D.; Palmade, L.; Blayo, C.; Konvalinka, J.; Dumay, E.; Inhibitor and Substrate Binding Induced Stability of HIV-1 Protease against Sequential Dissociation and Unfolding Revealed by High Pressure Spectroscopy and Kinetics. PLoS ONE, 2015, Roč. 10, č. 3, s.nestránkováno. IF 3.057 DOI: 10.1371/journal.pone.0119099

  10. Schimer, J.; Pávová, M.; Anders, M.; Pachl, P.; Šácha, P.; Cígler, P.; Weber, J.; Majer, P.; Řezáčová, P.; Kraeusslich, H.; Mueller, B.; Konvalinka, J.; Triggering HIV polyprotein processing by light using rapid photodegradation of a tight-binding protease inhibitor. Nature Communications, 2015, Roč. 6, č. 09 March 2015, s.nestránkováno. IF 11.329 DOI: 10.1038/ncomms7461

  11. Tykvart, J.; Schimer, J.; Jančařík, A.; Bařinková, J.; Navrátil, V.; Starková, J.; Šrámková, K.; Konvalinka, J.; Majer, P.; Šácha, P.; Design of Highly Potent Urea-Based, Exosite-Binding Inhibitors Selective for Glutamate Carboxypeptidase II. Journal of Medicinal Chemistry, 2015, Roč. 58, č. 10, s.4357-4363. IF 5.589 DOI: 10.1021/acs.jmedchem.5b00278

  12. Yang, M.; Hoeppner, M.; Rey, M.; Kádek, A.; Man, P.; Schriemer, D.; Recombinant Nepenthesin II for Hydrogen/Deuterium Exchange Mass Spectrometry. Analytical Chemistry, 2015, Roč. 87, č. 13, s.6681-6687. IF 5.886 DOI: 10.1021/acs.analchem.5b00831

  13. Kádek, A.; Kavan, D.; Felice, A.; Ludwig, R.; Halada, P.; Man, P.; Structural insight into the calcium ion modulated interdomain electron transfer in cellobiose dehydrogenase. FEBS Letters, 2015, Roč. 589, č. 11, s.1194-1199. IF 3.519 DOI: 10.1016/j.febslet.2015.03.029

  14. Shimizu, T.; Huang, D.; Yan, F.; Stráňava, M.; Bartošová, M.; Fojtíková, V.; Martínková, M.; Gaseous O-2, NO, and CO in Signal Transduction: Structure and Function Relationships of Heme-Based Gas Sensors and Heme-Redox Sensors. Chemical Reviews, 2015, Roč. 115, č. 13, s.6491-6533. IF 37.369 DOI: 10.1021/acs.chemrev.5b00018

  15. Lynn, G.; Laga, R.; Darrah, P.; Ishizuka, A.; Balaci, A.; Dulcey, A.; Pechar, M.; Pola, R.; Gerner, M.; Yamamoto, A.; Buechler, C.; Quinn, K.; Smelkinson, M.; Vaněk, O.; Cawood, R.; Hills, T.; Vasalatiy, O.; Kastenmueller, K.; Francica, J.; Stutts, L.; Tom, J.; Ryu, K.; Esser-Kahn, A.; Etrych, T.; Fisher, K.; Seymour, L.; Seder, R.; In vivo characterization of the physicochemical properties of polymer-linked TLR agonists that enhance vaccine immunogenicity. Nature Biotechnology, 2015, Roč. 33, č. 11, s.1201-U140. IF 43.113 DOI: 10.1038/nbt.3371

  16. Hasan, S.; Osičková, A.; Bumba, L.; Novák, P.; Šebo, P.; Osička, R.; Interaction of Bordetella adenylate cyclase toxin with complement receptor 3 involves multivalent glycan binding. FEBS Letters, 2015, Roč. 589, č. 3, s.374-379. IF 3.519 DOI: 10.1016/j.febslet.2014.12.023

2014 (out of 69)

 

  1. Kádek, A.; Mrázek, H.; Halada, P.; Rey, M.; Schriemer, D.; Man, P.; Aspartic Protease Nepenthesin-1 as a Tool for Digestion in Hydrogen/Deuterium Exchange Mass Spectrometry. Analytical Chemistry, 2014, Roč. 86, č. 9, s.4287-4294. IF 5.825 DOI: 10.1021/ac404076j
  2. Grantz Šašková, K.; Kožíšek, M.; Stray, K.; de Jong, D.; Řezáčová, P.; Brynda, J.; van Maarseveen, N.; Nijhuis, M.; Cihlář, T.; Konvalinka, J.; GS-8374, a Prototype Phosphonate-Containing Inhibitor of HIV-1 Protease, Effectively Inhibits Protease Mutants with Amino Acid Insertions. Journal of Virology, 2014, Roč. 88, č. 6, s.3586-3590. IF 4.648 DOI: 10.1128/JVI.02688-13
  3. Kopecka, M.; Kosek, D.; Kukacka, Z.; Rezabkova, L.; Man, P.; Novak, P.; Obsil, T.; Obsilova, V.; Role of the EF-hand like motif in the 14-3-3 protein-mediated activation of yeast neutral trehalase Nth1. J. Biol. Chem., 2014, Roč. 289, s.13948-13961. IF 4.6 DOI: 10.1074/jbc.M113.544551
  4. Anzenbacher, P.; Marchal, S.; Palacký, J.; Anzenbacherová, E.; Domaschke, T.; Lange, R.; Shimizu, T.; Kitanishi, K.; Stráňava, M.; Stiborová, M.; Martínková, M.; Pressure effects reveal that changes in the redox states of the heme iron complexes in the sensor domains of two heme-based oxygen sensor proteins, Ec DOS and YddV, have profound effects on their flexibility. FEBS Journal, 2014, Roč. 281, č. 23, s.5208-5219. IF 3.986 DOI: 10.1111/febs.13060
  5. Stiborová, M.; Moserová, M.; Černá, V.; Indra, R.; Dračínský, M.; Šulc, M.; Henderson, C.; Wolf, C.; Schmeiser, H.; Phillips, D.; Frei, E.; Arlt, V.; Cytochronne b(5) and epoxide hydrolase contribute to benzo[a]pyrene-DNA adduct formation catalyzed by cytochrome P450 1A1 under low NADPH:P450 oxidoreductase conditions. Toxicology, 2014, Roč. 318, č. APR 6 2014, s.1-12. IF 3.745 DOI: 10.1016/j.tox.2014.02.002
  6. Tykvart, J.; Navrátil, V.; Sedlák, F.; Corey, E.; Colombatti, M.; Fracasso, G.; Koukolík, F.; Bařinka, C.; Šácha, P.; Konvalinka, J.; Comparative analysis of monoclonal antibodies against prostate-specific membrane antigen (PSMA). Prostate, 2014, Roč. 74, č. 16, s.1674-1690. IF 3.566 DOI: 10.1002/pros.22887
  7. Stiborová, M.; Levová, K.; Bárta, F.; Šulc, M.; Frei, E.; Arlt, V.; Schmeiser, H.; The influence of dicoumarol on the bioactivation of the carcinogen aristolochic acid I in rats. Mutagenesis, 2014, Roč. 29, č. 3, s.189-200. 3.497 DOI: 10.1093/mutage/geu004
  8. Stiborová, M.; Schmeiser, HH.; Frei, E.; Hodek, P.; Martínek, V.; Enzymes Oxidizing the Azo Dye 1-Phenylazo-2-Naphthol (Sudan I) and their Contribution to its Genotoxicity and Carcinogenicity. Current Drug Metabolism, 2014, Roč. 15, č. 8, s.829-840. 3.487 DOI: 10.2174/1389200216666150206125442
  9. Stráňava, M.; Martínková, M.; Stiborová, M.; Man, P.; Kitanishi, K.; Muchová, L.; Vítek, L.; Martínek, V.; Shimizu, T.; Introduction of water into the heme distal side by Leu65 mutations of an oxygen sensor, YddV, generates verdoheme and carbon monoxide, exerting the heme oxygenase reaction. Journal of Inorganic Biochemistry, 2014, Roč. 140, č. NOV 2014, s.29-38. IF 3.274 DOI: 10.1016/j.jinorgbio.2014.06.010
  10. Jeřábek, P.; Florián, J.; Stiborová, M.; Martínek, V.; Flexible docking-based molecular dynamics/steered molecular dynamics calculations of protein-protein contacts in a complex of cytochrome P450 1A2 with cytochrome b5. Biochemistry, 2014, Roč. 53, č. 42, s.6695-6705. IF 3.194 DOI: 10.1021/bi500814t
  11. Ryšlavá, H.; Valenta, R.; Hýsková, V.; Křížek, T.; Liberda, J.; Coufal, P.; Purification and enzymatic characterization of tobacco leaf β-N-acetylhexosaminidase. Biochimie, 2014, Roč. 107 Part B, č. December 2014, s.263-269. IF 3.123 DOI: 10.1016/j.biochi.2014.09.006
  12. Hýsková, V.; Miedzińska, L.; Dobrá, J.; Vaňková, R.; Ryšlavá, H.; Phosphoenolpyruvate carboxylase, NADP-malic enzyme, and pyruvate, phosphate dikinase are involved in the acclimation of Nicotiana tabacum L. to drought stress. Journal of Plant Physiology, 2014, Roč. 171, č. 5, s.19-25. IF 2.77 DOI: 10.1016/j.jplph.2013.10.017
  13. Bárta, F.; Levová, K.; Frei, E.; Schmeiser, H.; Arlt, V.; Stiborová, M.; The effect of aristolochic acid I on expression of NAD(P)H:quinone oxidoreductase in mice and rats-A comparative study. Mutation Research - Genetic Toxicology and Environmental Mutagenesis, 2014, Roč. 768, č. JUL 1 2014, s.1-7. IF 2.481 DOI: 10.1016/j.mrgentox.2014.01.012
  14. Ptáčková, R.; Ječmen, T.; Novák, P.; Hudeček, J.; Stiborová, M.; Šulc, M.; The Application of an Emerging Technique for Protein-Protein Interaction Interface Mapping: The Combination of Photo-Initiated Cross-Linking Protein Nanoprobes with Mass Spectrometry. International Journal of Molecular Sciences, 2014, Roč. 15, č. 6, s.9224-9241. IF 2.339 DOI: 10.3390/ijms15069224
  15. Dráb, T.; Kračmerová, J.; Hanzlíková, E.; Černá, T.; Litváková, R.; Pohlová, A.; Tichá, M.; Přikryl, P.; Liberda, J.; The antimicrobial action of histones in the reproductive tract of cow. Biochemical and Biophysical Research Communications, 2014, Roč. 443, č. 3, s.987-990. IF 2.281 DOI: 10.1016/j.bbrc.2013.12.077
  16. Poljaková, J.; Groh, T.; Omaňa Gudiňo, Ž.; Hraběta, J.; Bořek Dohalská, L.; Kizek, R.; Doktorová, H.; Eckschlager, T.; Stiborová, M.; Hypoxia-mediated histone acetylation and expression of N-myc transcription factor dictate aggressiveness of neuroblastoma cells. Oncology Reports, 2014, Roč. 31, č. 4, s.1928-1934. IF 2.191 DOI: 10.3892/or.2014.2999

2013 (out of 63)

 

  1. Stiborová, M.; Dračínská, H.; Martínek, V.; Svášková, D.; Hodek, P.; Milichovský, J.; Hejduková, Ž.; Brotánek, J.; Schmeiser, H.; Frei, E.; Induced Expression of Cytochrome P450 1A and NAD(P)H:Quinone Oxidoreductase Determined at mRNA, Protein, and Enzyme Activity Levels in Rats Exposed to the Carcinogenic Azo Dye 1-Phenylazo-2-naphthol (Sudan I). Chemical Research in Toxicology, 2013, Roč. 26, č. 2, s.290-299. DOI: 10.1021/tx3004533
  2. Mrázek, H.; Weignerová, L.; Bojarová, P.; Novák, P.; Vaněk, O.; Bezouška, K.; Carbohydrate synthesis and biosynthesis technologies for cracking of the glycan code: Recent advances. Biotechnology Advances, 2013, Roč. 31, č. 1, s.17-37. DOI: 10.1016/j.biotechadv.2012.03.008

  3. Křížek, T.; Doubnerová, V.; Ryšlavá, H.; Coufal, P.; Bosáková, Z.; Offline and online capillary electrophoresis enzyme assays of beta-N-acetylhexosaminidase. Analytical and Bioanalytical Chemistry, 2013, Roč. 405, č. 8, s.2425-2434. DOI: 10.1007/s00216-012-6607-1

  4. Pokorná, J.; Heyda, J.; Konvalinka, J.; Ion specific effects of alkali cations on the catalytic activity of HIV-1 protease. Faraday Discussions, 2013, Roč. 160, č. leden 2013, s.359-370. DOI: 10.1039/c2fd20094e

  5. Rozbeský, D.; Sovová, Ž.; Marcoux, J.; Man, P.; Ettrich, R.; Robinson, C.; Novák, P.; Structural Model of Lymphocyte Receptor NKR-P1C Revealed by Mass Spectrometry and Molecular Modeling. Analytical Chemistry, 2013, Roč. 85, č. 3, s.1597-1604. DOI: 10.1021/ac302860m
  6. Koberová, M.; Ječmen, T.; Šulc, M.; Černá, V.; Kizek, R.; Hudeček, J.; Stiborová, M.; Hodek, P.; Photo-cytochrome b(5) - A New Tool to Study the Cytochrome P450 Electron-transport Chain. International Journal of Electrochemical Science, 2013, Roč. 8, č. 1, s.125-134.

  7. Vranová, I.; Moserová, M.; Hodek, P.; Kizek, R.; Frei, E.; Stiborová, M.; The Anticancer Drug Ellipticine Induces Cytochromes P450 1A1, 1A2 and 3A, Cytochrome b(5) and NADPH:Cytochrome P450 Oxidoreductase in Rat Liver, Kidney and Lung. International Journal of Electrochemical Science, 2013, Roč. 8, č. 2, s.1586-1597.

  8. Poljaková, J.; Eckschlager, T.; Cinatl, J.; Kizek, R.; Frei, E.; Stiborová, M.; Electrochemical Determination of Enzymes Metabolizing Ellipticine in Thyroid Cancer Cells - a Tool to Explain the Mechanism of Ellipticine Toxicity to these Cells. International Journal of Electrochemical Science, 2013, Roč. 8, č. 2, s.1573-1585.

  9. Hodek, P.; Trefil, P.; Šimůnek, J.; Hudeček, J.; Stiborová, M.; Optimized Protocol of Chicken Antibody (IgY) Purification Providing Electrophoretically Homogenous Preparations. International Journal of Electrochemical Science, 2013, Roč. 8, č. 1, s.113-124.

2012 (out of 60 in total)

 

  1. Rozbeský, Daniel.; Man, Petr.; Kavan, Daniel.; Chmelík, Josef.; Černý, Jiří.; Bezouška, Karel.; Novák, Petr.; Chemical cross-linking and H/D exchange for fast refinement of protein crystal structure Analytical Chemistry, 2012, 84, 2 IF 5.856, s.867-870. DOI: 10.1021/ac202818m
  2. Veselý, Filip.; Zolotarevová, Eva.; Špundová, Marcela.; Kaftan, Filip.; Šlouf, Miroslav.; Entlicher, Gustav.; Simple colorimetric methods for determination of sub-milligram amounts of ultrahigh molecular weight polyethylene wear particles Acta Biomaterialia, 2012, 8, 5 IF 4.865, s.1935-1938. DOI: 10.1016/j.actbio.2012.01.010
  3. Čeřovská, Noemi.; Hoffmeisterová, Hana.; Moravec, Tomáš.; Plchová, Helena.; Folwarczna, Jitka.; Synková, Helena.; Ryšlavá, Helena.; Ludvíková, Viera.; Šmahel, Michal.; Transient expression of Human papillomavirus type 16 L2 epitope fused to N- and C-terminus of coat protein of Potato virus X in plants Journal of Biosciences, 2012, 37, 1 IF 1.648, s.125-133. DOI: 10.1007/s12038-011-9177-z
  4. Haladová, Kateřina.; Mrázek, Hynek.; Ječmen, Tomáš.; Halada, Petr.; Man, Petr.; Novák, Petr.; Chmelík, Josef.; Obšil, Tomáš.; Šulc, Miroslav.; The combination of hydrogen/deuterium exchange or chemical cross-linking techniques with mass spectrometry: Mapping of human 14-3-3 zeta homodimer interface Journal of Structural Biology, 2012, 179, 1 IF 3.406, s.10-17. DOI: 10.1016/j.jsb.2012.04.016
  5. Levová, Kateřina.; Moserová, Michaela.; Nebert, Daniel W..; Phillips, David H..; Frei, Eva.; Schmeiser, Heinz H..; Arlt, Volker M..; Stiborová, Marie.; NAD(P)H:quinone oxidoreductase expression in Cyp1a-knockout and CYP1A-humanized mouse lines and its effect on bioactivation of the carcinogen aristolochic acid I Toxicology and Applied Pharmacology, 2012, 265, 3 IF 4.447, s.360-367. DOI: 10.1016/j.taap.2012.09.004
  6. Hlouchová, Klára.; Navrátil, Václav.; Tykvart, Jan.; Šácha, Pavel.; Konvalinka, Jan.; GCPII Variants, Paralogs and Orthologs Current Medicinal Chemistry, 2012, 19, 9 IF 4.859, s.1316-1322.
  7. Stiborová, Marie.; Indra, Radek.; Moserová, Michaela.; Černá, Věra.; Rupertová, Martina.; Martínek, Václav.; Eckschlager, Tomáš.; Kizek, René.; Frei, Eva.; Cytochrome b(5) Increases Cytochrome P450 3A4-Mediated Activation of Anticancer Drug Ellipticine to 13-Hydroxyellipticine Whose Covalent Binding to DNA Is Elevated by Sulfotransferases and N,O-Acetyltransferases Chemical Research in Toxicology, 2012, 25, 5 IF 3.779, s.1075-1085. DOI: 10.1021/tx3000335
  8. Naiman, Karel.; Dračínský, Martin.; Hodek, Petr.; Martínková, Markéta.; Schmeiser, Heinz H..; Frei, Eva.; Stiborová, Marie.; Formation, Persistence, and Identification of DNA Adducts Formed by the Carcinogenic Environmental Pollutant o-Anisidine in Rats Toxicological Sciences, 2012, 127, 2 IF 4.652, s.348-359. DOI: 10.1093/toxsci/kfs104
  9. Kizek, René.; Adam, Vojtěch.; Hraběta, Jan.; Eckschlager, Tomáš.; Smutný, Svatopluk.; Burda, Jaroslav.; Frei, Eva.; Stiborová, Marie.; Anthracyclines and ellipticines as DNA-damaging anticancer drugs: Recent advances Pharmacology and Therapeutics, 2012, 133, 1 IF 8.562, s.26-39. DOI: 10.1016/j.pharmthera.2011.07.006
  10. Stiborová, Marie.; Eckschlager, Tomáš.; Poljaková, Jitka.; Hraběta, Jan.; Adam, Vojtěch.; Kizek, René.; Frei, Eva.; The Synergistic Effects of DNA-Targeted Chemotherapeutics and Histone Deacetylase Inhibitors As Therapeutic Strategies for Cancer Treatment Current Medicinal Chemistry, 2012, 19, 25 IF 4.859, s.4218-4238.
  11. Rajčanová, Michaela.; Tichá, Marie.; Kučerová, Zdenka.; Application of heptapeptides containing D-amino acid residues immobilized to magnetic particles and Sepharose for the study of binding properties of gastric aspartic proteases Journal of Separation Science, 2012, 35, 15 IF 2.733, s.1899-1905. DOI: 10.1002/jssc.201200221
  12. Skálová, Tereza.; Kotýnková, Kristýna.; Dušková, Jarmila.; Hašek, Jindřich.; Koval, Tomáš.; Kolenko, Petr.; Novák, Petr.; Man, Petr.; Hanč, Pavel.; Vaněk, Ondřej.; Bezouška, Karel.; Dohnálek, Jan.; Mouse Clr-g, a Ligand for NK Cell Activation Receptor NKR-P1F: Crystal Structure and Biophysical Properties Journal of Immunology, 2012, 189, 10 IF 5.788, s.4881-4889. DOI: 10.4049/jimmunol.1200880
  13. Stiborová, Marie.; Čechová, Tereza.; Bořek Dohalská, Lucie.; Moserová, Michaela.; Frei, Eva.; Schmeiser, Heinz H..; Páca, Jan.; Arlt, Volker M..; Activation and detoxification metabolism of urban air pollutants 2-nitrobenzanthrone and carcinogenic 3-nitrobenzanthrone by rat and mouse hepatic microsomes Neuroendocrinology Letters, 2012, 33, Suppl 3 IF 1.296, s.8-15.
  14. Jeřábek, Petr.; Martínek, Václav.; Stiborová, Marie.; Theoretical investigation of differences in nitroreduction of aristolochic acid I by cytochromes P450 1A1, 1A2 and 1B1 Neuroendocrinology Letters, 2012, 33, Suppl 3 IF 1.296, s.25-32.
  15. Šulc, Miroslav.; Ječmen, Tomáš.; Šnajdrová, Renata.; Novák, Petr.; Martínek, Václav.; Hodek, Petr.; Stiborová, Marie.; Hudeček, Jiří.; Mapping of interaction between cytochrome P450 2B4 and cytochrome b5: the first evidence of two mutual orientations Neuroendocrinology Letters, 2012, 33, Suppl 3 IF 1.296, s.41-47.

2011 (out of 48 in total)

 

  1. Šulc, M.; Fadrhonsová, I.; Jelínková, M.; Chudomelová, M.; Felsberg, J.; Olšovská, J.; Determination of sibiromycin and its natural derivatives using new analytical and structural approaches Journal of Chromatography A, 2011, 1(9), IF 4.194, s.83-91, DOI: 10.1016/j.chroma.2010.10.110
  2. Ryšlavá, H.; Kalendová, A.; Doubnerová, V.; Skočdopol, P.; Kumar, V.; Kukačka, Z.; Pompach, P.; Vaněk, O.; Slámová, K.; Bojarová, P.; Kulik, N.; Ettrich, R.; Křen, V.; Bezouška, K.; Enzymatic characterization and molecular modeling of an evolutionarily interesting fungal beta-N-acetylhexosaminidase FEBS Journal, 2011, 14(16), IF 3.129, s.2469-2484, DOI: 10.1111/j.1742-4658.2011.08173.x
  3. Dráb, T.; Kračmerová, J.; Tichá, I.; Hanzlíková, E.; Tichá, M.; Ryšlavá, H.; Doubnerová, V.; Maňásková-Postlerová, P.; Liberda, J.; Native Red Electrophoresis - A new method suitable for separation of native proteins Electrophoresis, 2011, 24(3), IF 3.569, s.3597-3599, DOI: 10.1002/elps.201100310
  4. Plechanovová, A.; Byun, Y.; Alquicer, G.; Skultetyova, L.; Mlčochová, P.; Němcová, A.; Kim, H.; Navrátil, M.; Mease, R.; Lubkowski, J.; Pomper, M.; Konvalinka, J.; Rulíšek, L.; Bařinka, C.; Novel Substrate-Based Inhibitors of Human Glutamate Carboxypeptidase II with Enhanced Lipophilicity Journal of Medicinal Chemistry, 2011, 21(12), IF 5.207, s.7535-7546, DOI: 10.1021/jm200807m
  5. Kotrbová, V.; Mrázová, B.; Moserová, M.; Martínek, V.; Hodek, P.; Hudeček, J.; Frei, E.; Stiborová, M.; Cytochrome b(5) shifts oxidation of the anticancer drug ellipticine by cytochromes P450 1A1 and 1A2 from its detoxication to activation, thereby modulating its pharmacological efficacy Biochemical Pharmacology, 2011, 6(12), IF 4.889, s.669-680, DOI: 10.1016/j.bcp.2011.06.003
  6. Stiborová, M.; Mareš, J.; Frei, E.; Arlt, VM.; Martínek, V.; Schmeiser, HH.; The Human Carcinogen Aristolochic Acid I Is Activated to Form DNA Adducts by Human NAD(P)H:quinone Oxidoreductase Without the Contribution of Acetyltransferases or Sulfotransferases Environmental and Molecular Mutagenesis, 2011, 6(12), IF 3.493, s.448-459, DOI: 10.1002/em.20642
  7. Pechar, M.; Pola, R.; Laga, R.; Ulbrich, K.; Bednárová, L.; Maloň, P.; Sieglová, I.; Král, V.; Fábry, M.; Vaněk, O.; Coiled Coil Peptides as Universal Linkers for the Attachment of Recombinant Proteins to Polymer Therapeutics Biomacromolecules, 2011, 10(11), IF 5.325, s.3645-3655, DOI: 10.1021/bm200897b
  8. Levová, K.; Moserová, M.; Kotrbová, V.; Šulc, M.; Henderson, CJ.; Wolf, CR.; Phillips, DH.; Frei, E.; Schmeiser, HH.; Mareš, J.; Arlt,, VM.; Stiborová, M.; Role of Cytochromes P450 1A1/2 in Detoxication and Activation of Carcinogenic Aristolochic Acid I: Studies with the Hepatic NADPH:Cytochrome P450 Reductase Null (HRN) Mouse Model Toxicological Sciences, 2011, 1(14), IF 5.093, s.43-56, DOI: 10.1093/toxsci/kfr050
  9. Arlt, VM.; Levová, K.; Bárta, F.; Shi, ZQ.; Evans, JD.; Frei, E.; Schmeiser, HH.; Nebert, DW.; Phillips, DH.; Stiborová, M.; Role of P450 1A1 and P450 1A2 in Bioactivation versus Detoxication of the Renal Carcinogen Aristolochic Acid I: Studies in Cyp1a1(-/-), Cyp1a2(-/-), and Cyp1a1/1a2(-/-) Mice Chemical Research in Toxicology, 2011, 10(10), IF 4.148, s.1710-1719, DOI: 10.1021/tx200259y
  10. Kolenko, P.; Rozbeský, D.; Vaněk, O.; Kopecký, V.; Hofbauerová, K.; Novák, P.; Pompach, P.; Hašek, J.; Skálová, T.; Bezouška, K.; Dohnálek, J.; Molecular architecture of mouse activating NKR-P1 receptors Journal of Structural Biology, 2011, 3(8), IF 3.497, s.434-441, DOI: 10.1016/j.jsb.2011.05.001
  11. Křížková, S.; Zítka, O.; Masařík, M.; Adam, V.; Stiborová, M.; Eckschlager, T.; Chavis, GJ.; Kizek, R.; Assays for determination of matrix metalloproteinases and their activity TrAC - Trends in Analytical Chemistry, 2011, 11(14), IF 6.602, s.1819-1832, DOI: 10.1016/j.trac.2011.06.016

2010 (out of 40 in total)

 

  1. Renaudet, O.; Křenek, K.; Bossu, I.; Dumy, P.; Kádek, A.; Adámek, D.; Vaněk, O.; Kavan, D.; Gažák, R.; Šulc, M.; Bezouška, K.; Křen, V.; Synthesis of Multivalent Glycoconjugates Containing the Immunoactive LELTE Peptide: Effect of Glycosylation on Cellular Activation and Natural Killing by Human Peripheral Blood Mononuclear Cells Journal of the American Chemical Society, 2010, 19(9), IF 9.019, s.6800-6808, DOI: 10.1021/ja101296t
  2. Adam, V.; Fabrik, I.; Eckschlager, T.; Stiborová, M.; Trnková, L.; Kizek, R.; Vertebrate metallothioneins as target molecules for analytical techniques. TrAC - Trends in Analytical Chemistry, 2010, 5(10), IF 6.602, s.409-418, DOI: 10.1016/j.trac.2010.02.004
  3. Strohalm, M.; Kavan, D.; Novák, P.; Volný, M.; Havlíček, V.; mMass 3: A Cross-Platform Software Environment for Precise Analysis of Mass Spectrometric Data Analytical Chemistry, 2010, 11(4), IF 5.874, s.4648-4651, DOI: 10.1021/ac100818g
  4. Rey, M.; Mrázek, H.; Pompach, P.; Novák, P.; Pelosi, L.; Brandolin, G.; Forest, E.; Havlíček, V.; Man, P.; Effective Removal of Nonionic Detergents in Protein Mass Spectrometry, Hydrogen/ Deuterium Exchange, and Proteomics Analytical Chemistry, 2010, 12(10), IF 5.874, s.5107-5116, DOI: 10.1021/ac100171m
  5. Vidová, V.; Novák, P.; Strohalm, M.; Pól, J.; Havlíček, V.; Volný, M.; Laser Desorption-Ionization of Lipid Transfers: Tissue Mass Spectrometry Imaging without MALDI Matrix Analytical Chemistry, 2010, 12(4), IF 5.874, s.4994-4997, DOI: 10.1021/ac100661h
  6. Kovalová, A.; Ledvina, M.; Šaman, D.; Zyka, D.; Kubíčková, M.; Žídek, L.; Sklenář, V.; Pompach, P.; Kavan, D.; Bílý, J.; Vaněk, O.; Kubínková, Z.; Libigerová, M.; Ivanová, Ľ.; Antolíková, E.; Mrázek, H.; Rozbeský, D.; Hofbauerová, K.; Křen, V.; Bezouška, K.; Synthetic N-Acetyl-D-glucosamine Based Fully Branched Tetrasaccharide, a Mimetic of the Endogenous Ligand for CD69, Activates CD69 Killer Lymphocytes upon Dimerization via a Hydrophilic Flexible Linker Journal of Medicinal Chemistry, 2010, 10(16), IF 5.207, s.4050-4065, DOI: 10.1021/jm100055b
  7. Martínek, V.; Sklenář, J.; Dračínský, M.; Šulc, M.; Hofbauerová, K.; Bezouška, K.; Frei, E.; Stiborová, M.; Glycosylation Protects Proteins against Free Radicals Generated from Toxic Xenobiotics Toxicological Sciences, 2010, 2(16), IF 5.093, s.359-374, DOI: 10.1093/toxsci/kfq206
  8. Martínková, E.; Maglott, A.; Leger, DY.; Bonnet, D.; Stiborová, M.; Takeda, K.; Martin, S.; Dontenwill, M.; alpha5beta1 integrin antagonists reduce chemotherapy-induced premature senescence and facilitate apoptosis in human glioblastoma cells. International Journal of Cancer, 2010, 5(9), IF 4.926, s.1240-1248, DOI: 10.1002/ijc.25187
  9. Zolotarevová, E.; Entlicher, G.; Pavlová, E.; Šlouf, M.; Pokorný, D.; Veselý, F.; Gallo, J.; Sosna, A.; Distribution of polyethylene wear particles and bone fragments in periprosthetic tissue around total hip joint replacements Acta Biomaterialia, 2010, 9(6), IF 4.822, s.3595-3600, DOI: 10.1016/j.actbio.2010.04.010
  10. Novotná, L.; Emmerová, T.; Horák, D.; Kučerová, Z.; Tichá, M.; Iminodiacetic acid-modified magnetic poly(2-hydroxyethyl methacrylate)-based microspheres for phosphopeptide enrichment Journal of Chromatography A, 2010, 51(9), IF 4.194, s.8032-8040, DOI: 10.1016/j.chroma.2010.08.058
  11. Stiborová, M.; Martínek, V.; Svobodová, M.; Šístková, J.; Dvořák, Z.; Ulrichová, J.; Šimánek, V.; Frei, E.; Schmeiser, HH.; Phillips, DH.; Arlt, VM.; Mechanisms of the different DNA adduct forming potentials of the urban air pollutants 2-nitrobenzanthrone and carcinogenic 3-nitrobenzanthrone Chemical Research in Toxicology, 2010, 7(10), IF 4.148, s.1192-1201, DOI: 10.1021/tx100052d
  12. Černý, M.; Doubnerová, V.; Müller, K.; Ryšlavá, H.; Characterization of phosphoenolpyruvate carboxylase from mature maize seeds: Properties of phosphorylated and dephosphorylated forms. Biochimie, 2010, 10(9), IF 3.787, s.1362-1370, DOI: 10.1016/j.biochi.2010.06.019
  13. Fanfrlík, J.; Bronowska, AK.; Řezáč, J.; Přenosil, O.; Konvalinka, J.; Hobza, P.; A reliable docking/scoring scheme based on the semiempirical quantum mechanical PM6-DH2 method accurately covering dispersion and H-bonding: HIV-1 protease with 22 ligands. Journal of Physical Chemistry B, 2010, 39(13), IF 3.603, s.12666-12678, DOI: 10.1021/jp1032965
  14. Zolotarevová, E.; Hudeček, J.; Špundová, M.; Entlicher, G.; Binding of proteins to ultra high molecular weight polyethylene wear particles as a possible mechanism of macrophage and lymphocyte activation Journal of Biomedical Materials Research - Part A, 2010, 3(6), IF 3.044, s.950-955, DOI: 10.1002/jbm.a.32924

2009 (out of 43 in total)

 

  1. Martínková, L.; Vejvoda, V.; Kaplan, O.; Kubáč, D.; Malandra, A.; Cantarella, M.; Bezouška, K.; Křen, V.; Fungal nitrilases as biocatalysts: Recent developments Biotechnology advances, 2009, 6(10), IF 8.250, s.661-670 http://dx.doi.org/10.1016/j.biotechadv.2009.04.027
  2. Grantz Šašková, K.; Kožíšek, M.; Řezáčová, P.; Brynda, J.; Yashina, T.; Kagan, R.; Konvalinka, J.; Molecular Characterization of Clinical Isolates of Human Immunodeficiency Virus Resistant to the Protease Inhibitor Darunavir Journal of Virology, 2009, 17(9), IF 5.150, s.8810-8818 http://dx.doi.org/10.1128/JVI.00451-09
  3. Schmeiser, H.; Stiborová, M.; Arlt, V.; Chemical and molecular basis of the carcinogenicity of Aristolochia plants Current opinion in drug discovery & development, 2009, 1(8), IF 4.904, s.141-148
  4. Hoffman, H.; Jirásková, J.; Cígler, P.; Šanda, M.; Schraml, J.; Konvalinka, J.; Hydroxamic acids as a novel family of serine racemase inhibitors: Mechanistic analysis reveals different modes of interaction with the pyridoxal-5'-phosphate cofactor Journal of Medicinal Chemistry, 2009, 19(10), IF 4.802, s.6032-6041 http://dx.doi.org/10.1021/jm900775q
  5. Poljaková, J.; Eckschlager, T.; Hraběta, J.; Hřebačková, J.; Smutný, S.; Frei, E.; Martínek, V.; Kizek, R.; Stiborová, M.; The mechanism of cytotoxicity and DNA adduct formation by the anticancer drug ellipticine in human neuroblastoma cells Biochemical Pharmacology, 2009, 9(14), IF 4.254, s.1466-1479 http://dx.doi.org/10.1016/j.bcp.2009.01.021
  6. Heyda, J.; Pokorná, J.; Vrbka, L.; Vácha, R.; Jagoda-Cwiklik, B.; Konvalinka, J.; Jungwirth, P.; Vondrášek, J.; Ion specific effects of sodium and potassium on the catalytic activity of HIV-1 protease Physical chemistry chemical physics, 2009, 35(6), IF 4.116, s.7599-7604 http://dx.doi.org/10.1039/b905462f
  7. Dračínský, M.; Cvačka, J.; Semanská, M.; Martínek, V.; Frei, E.; Stiborová, M.; Mechanism of formation of (deoxy)guanosine adducts derived from peroxidase-catalyzed oxidation of the carcinogenic nonaminoazo dye 1-phenylazo-2-hydroxynaphthalene (Sudan I) Chemical Research in Toxicology, 2009, 11(9), IF 3.740, s.1765-1773 http://dx.doi.org/10.1021/tx900201q
  8. Balková, P.; Ježková, J.; Hlaváčková, M.; Neckář, J.; Staňková, B.; Kolář, F.; Novák, F.; Nováková, O.; Dietary polyunsaturated fatty acids and adaptation to chronic hypoxia alter acyl composition of serum and heart lipids British Journal of Nutrition, 2009, 9(11), IF 3.446, s.1297-1307 http://dx.doi.org/10.1017/S0007114509389242
  9. Pompach, P.; Man, P.; Kavan, D.; Hofbauerová, K.; Kumar, V.; Bezouška, K.; Havlíček, V.; Novák, P.; Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds. Journal of Mass Spectrometry, 2009, 11(8), IF 3.411, s.1571-1578 http://dx.doi.org/10.1002/jms.1609
  10. Klusák, V.; Bařinka, C.; Plechanovová, A.; Mlčochová, P.; Konvalinka, J.; Rulíšek, L.; Lubkowski, J.; Reaction mechanism of glutamate carboxypeptidase II revealed by mutagenesis, X-ray crystallography and computational methods Biochemistry, 2009, 19(13), IF 3.226, s.4126-4138 http://dx.doi.org/10.1021/bi900220s
  11. Mlčochová, P.; Bařinka, C.; Tykvart, J.; Šácha, P.; Konvalinka, J.; Prostate-specific membrane antigen and its truncated form PSM' Prostate, 2009, 5(9), IF 3.081, s.471-479 http://dx.doi.org/10.1002/pros.20894
  12. Hlouchová, K.; Bařinka, C.; Konvalinka, J.; Lubkowski, J.; Structural insight into the evolutionary and pharmacologic homology of glutamate carboxypeptidases II and III FEBS JOURNAL, 2009, 16(15), IF 3.042, s.4448-4462 http://dx.doi.org/10.1111/j.1742-4658.2009.07152.x

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