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Publikace členů Laboratoře od r. 1995

Články v časopisech s IF

Frydrýšková K., Mašek T., Pospíšek M. (2020): Changing faces of stress: impact of heat and arsenite treatment on the composition of stress granules. Wiley Interdiscip. Rev. RNA e1596. [PubMed]

Novák J., Zámostná B., Vopálenský V., Burýšková M., Burýšek L., Dolečková D., Pospíšek M. (2020): Interleukin-1α associates with the tumor suppressor p53 following DNA damage. Sci. Rep. 10 (1): 6995. [PubMed]

Mašek T., Del Llano E., Gahurová L., Kubelka M., Susor A., Roučová K., Lin C.J., Bruce A.W., Pospíšek M. (2020): Identifying the translatome of mouse NEBD-stage oocytes via SSP-profiling; a novel polysome fractionation method. Int. J. Mol. Sci. 21 (4): 1254. [PubMed]

Vopálenský V., Sýkora M., Mašek T., Pospíšek M. (2019): Messenger RNAs of yeast virus-like elements contain non-templated 5′ poly(A) leaders, and their expression is independent of eIF4E and Pab1. Front. Microbiol. 10: 2366. [PubMed]

Končická M., Tetková A., Jansová D., Del Llano E.,  Gahurová L., Kráčmarová J., Prokešová S.,  Mašek T.,  Pospíšek M., Bruce AW., Kubelka M., Susor A. (2018): Increased expression of maturation promoting factor components speeds up meiosis in oocytes from aged females. Int. J. Mol. Sci. 19 (9): pii: E2841. [PubMed]

Mrvová S., Frydrýšková K., Pospíšek M., Vopálenský V., Mašek T. (2018): Major splice variants and multiple polyadenylation site utilization in mRNAs encoding human translation initiation factors eIF4E1 and eIF4E3 regulate the translational regulators? Mol. Genet. Genomics 293 (1): 167-186. [PubMed]

Sýkora M., Pospíšek M., Novák J., Mrvová S., Krásný L., Vopálenský V. (2018): Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin. PLoS Pathogens 14 (10): e1007377. [PubMed]

Venturi V., Mašek T., Pospíšek M. (2018): A blood pact: the significance and implications of eIF4E on lymphocytic leukemia. Physiol. Res. 67 (3): 363-382 [PubMed]

Vopálenský V., Khawaja A., Rožnovský L., Mrázek J., Mašek T., Pospíšek M. (2018): Characterization of hepatitis C virus IRES quasispecies – from the individual to the pool. Front. Microbiol. 9: 731. [PubMed]

Ševčíková H., Mašková P., Tarkowská D., Mašek T., Lipavská H. (2017): Carbohydrates and gibberellins relationship in potato tuberization. J. Plant Physiol. 214: 53-63. [PubMed]

Vaněk D., Budowle B., Dubská-Votrubová J., Ambers A., Frolík J., Pospíšek M., Al Afeefi A.A., Al Hosani K.I., Allen M., Al Naimi K.S., Al Salafi D., Al Tayyari W.A.R., Arguetaa W., Bottinelli M., Bus M.M., Cemper-Kiesslich J., Cepil O., De Cock G., Desmyter S., El Amri H., El Ossmani H., Galdies R., Grün S., Guidet F., Hoefges A., Iancu C.B., Lotz P., Maresca A., Nagy M., Novotný J., Rachid H., Rothe J., Stenersen M., Stephenson M., Stevanovitch A., Strien J., Sumita D.R., Vella J., Zander J. (2017): Results of a collaborative study on DNA identification of aged bone samples. Croat. Med. J. 58 (3): 203-213. [PubMed]

Floden E.W., Khawaja A., Vopálenský V., Pospíšek M. (2016): HCVIVdb: The hepatitis-C IRES variation database. BMC Microbiol. 16: 187.  [PubMed]

Frydrýšková K., Mašek T., Borčin K., Mrvová S., Venturi V., Pospíšek M. (2016): Distinct recruitment of human eIF4E isoforms to processing bodies and stress granules. BMC Mol. Biol. 17 (1): 21. [PubMed]

Josefiová J., Pospíšek M., Vaněk D. (2016): Decontamination by Persteril 36 may affect the reliability of DNA-based detection of biological warfare agents-short communication. Folia Microbiol. 61 (5): 417-421. [PubMed]

Khawaja A., Vopálenský V., Pospíšek M. (2015): Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function. Wiley Interdiscip. Rev. RNA 6(2): 211-224. [PubMed]

Mašek T., Vopálenský V., Pospíšek M. (2013): The Luc2 gene enhances reliability of bicistronic assays. Centr. Eur. J. Biol. 8 (5): 423-431. [SpringerLink]

Pospíšek M., Valášek L. (2013): Polysome profile analysis - yeast. Methods Enzymol.530: 173-181. [PubMed]

Zámostná B., Novák J., Vopálenský V., Mašek T., Burýšek L., Pospíšek M. (2012): N-terminal domain of nuclear IL-1α shows structural similarity to the C-terminal domain of Snf1 and binds to the HAT/Core module of the SAGA complex. PLoS ONE 7 (8): e41801 [PubMed]

Feketová Z., Mašek T., Vopálenský V., Pospíšek M. (2010): Ambiguous decoding of the CUG codon alters the functionality of the Candida albicans translation initiation factor 4E. FEMS Yeast Res. 10 (5): 558-569. [PubMed]

Mokrejš M., Mašek T., Vopálenský V., Hlubuček P., Delbos P., Pospíšek M. (2010): IRESite - a tool for the examination of viral and cellular internal ribosome entry sites. Nucleic Acids Res. 38 (Suppl.): D131-D136. [PubMed]

Stárková J., Zámostná B., Mejstříková E., Krejčí R., Drabkin H.A., Trka J. (2010): HOX gene expression in phenotypic and genotypic subgroups and low HOXA gene expression as an adverse prognostic factor in pediatric ALL. Pediatric Blood & Cancer 55 (6): 1072-1082. [PubMed]

Martinez D., Challacombe J., Morgenstern I., Hibbett D., Schmoll M., Kubicek C.P., Ferreira P., Ruiz-Duenas F.J., Martinez A.T., Kersten P., Hammel K.E., Wymelenberg A.V., Gaskell J., Lindquist E., Sabat G., BonDurant S.S., Larrondo L.F., Canessa P., Vicuna R., Yadav J., Doddapaneni H., Subramanian V., Pisabarro A.G., Lavin J.L., Oguiza J.A., Master E., Henrissat B., Coutinho P.M., Harris P., Magnuson J.K., Baker S.E., Bruno K., Kenealy W., Hoegger P.J., Kues U., Ramaiya P., Lucash S., Salamov A., Shapiro H., Tu H., Chee C.L., Misra M., Xie G., Teter S., Yaver D., James T., Mokrejš M., Pospíšek M., Grigoriev I.V., Brettin T., Rokhsar D., Berka R., Cullen D. (2009): Genome, transcriptome and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc. Natl. Acad. Sci. U.S.A. 106 (6): 1954-1959. [PubMed]

Valášková V., de Boer W., Gunnewiek P.J.A.K., Pospíšek M., Baldrián P. (2009): Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood. ISME J. 3 (10): 1218-1221. [PubMed]

Vicenová B., Vopálenský V., Burýšek L., Pospíšek M. (2009): Emerging role of interleukin-1 in cardiovascular diseases. Physiol. Res. 58 (4): 481-498. [PubMed]

Vopálenský V., Mašek T., Horváth O., Vicenová B., Mokrejš M., Pospíšek M. (2008): Firefly luciferase gene contains a cryptic promoter. RNA - Publ. RNA Soc. 14 (9): 1720-1729. [PubMed]

Mašek T., Vopálenský V., Horváth O., Vortelová L., Feketová Z., Pospíšek M. (2007): Hepatitis C virus internal ribosome entry site initiates protein synthesis at the authentic initiation codon in yeast. J. Gen. Virol. 88 (7): 1992-2002. [PubMed]

Mokrejš M., Vopálenský V., Kolenatý O., Mašek T., Feketová Z., Sekyrová P., Škaloudová B., Kříž V., Pospíšek M. (2006): IRESite: the database of experimentally verified IRES structures (www.iresite.org). Nucleic Acids Res. 34 (Sp. Iss. SI): D125-D130. [PubMed]

Swaminathan S., Mašek T., Molin C., Pospíšek M., Sunnerhagen P. (2006): Rck2 is required for reprogramming of ribosomes during oxidative stress. Mol. Biol. Cell 17 (3): 1472-1482. [PubMed]

Vališ K., Mašek T., Novotná D., Pospíšek M., Janderová B. (2006): Immunity to killer toxin K1 is connected with the Golgi-to-vacuole protein degradation pathway. Folia Microbiol. 51 (3): 196-202. [SpringerLink]

Dvořák J., Delcroix M., Rossi A., Vopálenský D., Pospíšek M., Šedinová M., Mikeš L., Sajid B., Sali A., McKerrow J.H., Horák P., Caffrey C.R. (2005): Multiple cathepsin B isoforms in schistosomula of Trichobilharzia regenti: identification, characterisation and putative role in migration and nutrition. Int. J. Parasitol. 35 (8): 895-910. [PubMed]

Mašek T., Vopálenský V., Suchomelová P., Pospíšek M. (2005): Denaturing RNA electrophoresis in TAE agarose gels. Anal. Biochem. 336 (1): 46-50. [PubMed]

Ruepp A., Zollner A., Maier D., Albermann K., Hani J., Mokrejš M., Tetko I., Güldener U., Mannhaupt G., Münsterkötter M., Mewes H.W. (2005): The FunCat (Functional Catalogue), a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res. 32 (18): 5539-5545. [PubMed]

Burýšková M., Pospíšek M., Grothey A., Simmet T., Burýšek L. (2004): Intracellular interleukin-1 alpha functionally interacts with histone acetyltransferase complexes. J. Biol. Chem. 279 (6): 4017-4026. [PubMed]

Suchomelová P., Velgová D., Mašek T., Francis D., Rogers H.J., Marchbank A.M., Lipavská H. (2004): Expression of the fission yeast cycle regulator cdc25 induces de novo shoot formation in tobacco: Evidence of a cytokinin-like effect by this mitotic activator. Plant Physiol. Biochem. 42 (1): 49-55. [PubMed]

Nesměrák K., Pospíšek M., Zikánová B., Němec I., Barbe J., Gabriel J. (2002): Effect of structure on antibiotic action of new p-(ethylthio)acridines. Folia Microbiol. 47 (2): 118-120. [SpringerLink]

Mašek T., Smýkal P., Janotová I., Honys D., Čapková V., Pechan P. (2000): Isolation of a Brassica napus L. cDNA encoding a putative high-mobility-group HMG-I/Y protein. Plant Sci. 159 (2): 197-204. [PubMed]

Nesměrák K., Pospíšek M., Němec I., Waisser K., Gabriel J. (2000): Antifungal properties of substituted 1-phenyl-5-mercaptotetrazoles and their oxidation product, 5-bis-(1-phenyltetrazolyl) disulfide. Folia Microbiol. 45 (2): 138-142. [SpringerLink]

Baldrian P., Gabriel J., Pospíšek M. (1999): Improved isolation of nucleic acids from basidiomycete fungi. Biotechniques 27 (3): 458-462.

Palková Z., Janderová B., Gabriel J., Zikánová B., Pospíšek M., Forstová J. (1997): Ammonia mediates communication between yeast colonies. Nature 390 (6659): 532-536. [PubMed]

Palková Z., Pospíšek M., Zikánová B. (1996): Techniques for colony DNA hybridization and protein immunoassays for a broad spectrum of yeast genera. Biotechniques 21 (6): 982.

Pospíšek M., Palková Z., Korb J., Vaněk D. (1996): Isolation and characterization of a new dsRNA virus from Wickerhamia fluorescens. Folia Microbiol. 41 (3): 223-227 [SpringerLink]

 

Články v recenzovaných časopisech bez IF

Rožnovský L., Orságová I., Petroušová L., Mrázek J., Kloudová A., Kabieszová L., Kůrková J., Pospíšek M. (2010): Opakovaná léčba pegylovaným interferonem s ribavirinem u pacientů s chronickou hepatitidou C - vlastní zkušenosti. Klin. Mikrobiol. Infekč. Lék. 16 (2): 73-75. [Pubmed]

Vaněk D., Pospíšek M. (2002): An improved method for rapid AB0 genotyping. Acta Universitatis Carolinae – Medica 103 (1): 29-33. [PubMed]

Mašek T. (2000): Molekulární a buněčné aspekty vývoje pylu u krytosemenných rostlin. Biologické listy 65 (1): 27-51. [Biologické listy]

Vopálenský V. (2000): Lineární plasmidy kvasinek - Kluyveromyces lactis jako model. Biologické listy 65 (1): 1-26. [Biologické listy]

Pospíšek M. (1998): Kvasinkové dsRNA viry I. (taxonomie, morfologie a funkce, životní cyklus). Biologické listy 63 (2): 81-113. [Biologické listy]

Pospíšek M. (1998): Kvasinkové dsRNA viry II. (toxiny, méně známé kvasinkové viry a parazitické RNA, biotechnologie). Biologické listy 63 (2): 115-138. [Biologické listy]

Pospíšek M., Vaněk D. (1998): Co je nového ve forenzní molekulární genetice? Biologické listy 63 (2): 155-156.

Gabriel J., Pospíšek M., Palková Z., Němeček J., Havlíček V., Volc J., Kubátová E. (1996): Formation of new antimicrobial 13-H-1,5 benzodiazepinol[2,3-b]quinoxaline during the reaction of 4-deoxy-2,3-aldosdiuloses with o-phenylenediamine. Pharm. Sci. 1 (12): 581-583.

Vaněk D., Pospíšek M., Laupy M. (1996): Forenzní genetika a kriminalistická praxe. Kriminalistika 26: 213-216.

 

Knihy, kapitoly v knihách a recenzovaných sbornících, učební texty

Mašek T., Valášek L., Pospíšek M. (2011): Polysome analysis and RNA purification from sucrose gradients. In: Nielsen H. (ed.): RNA. Methods and Protocols (Methods in Molecular Biology, 703/2). Humana Press / Springer Science + Business Media, New York-Dordrecht-Heidelberg-London pp. 293-309. [SpringerLink]

Mokrejš M., Vopálenský V., Mašek T., Pospíšek M. (2007): A bioinformatical approach to the analysis of viral and cellular internal ribosome entry sites. In: Kwang L.B. (ed.): New messenger RNA research communications. Nova Science Publishers, Inc, New York, pp. 133-166. [GoogleBooks]

Vaněk D., Pospíšek M. (2000): Estimation of postmortem interval using DNA analysis. In: Sensabaugh G.F., Lincoln P.J., Olaisen B. (eds): Progress in Forensic Genetics 8, pp. 585-587.

 

Software

Hlubuček P., Mokrejš M., Pospíšek M. (2009): Modification of VARNA applet.

Hlubuček P., Mokrejš M., Pospíšek M. (2009): RNAforester.

Mokrejš M., Hlubuček P., Vopálenský V., Mašek T., Pospíšek M. (2009): IRESite: The database of experimentally verified IRES structures.

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